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TPRXL tetrapeptide repeat homeobox like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 348825, updated on 16-Jul-2021

Summary

Official Symbol
TPRXLprovided by HGNC
Official Full Name
tetrapeptide repeat homeobox like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:32178
See related
Ensembl:ENSG00000180438 MIM:611167
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TPRX3P
Summary
Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the TPRX homeobox gene family. [provided by RefSeq, Jul 2008]
Expression
Biased expression in esophagus (RPKM 1.6), testis (RPKM 1.0) and 6 other tissues See more
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Genomic context

See TPRXL in Genome Data Viewer
Location:
3p25.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (13937307..14065984)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (13978807..14107484)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 20 pseudogene Neighboring gene FYVE, RhoGEF and PH domain containing 5 pseudogene 1 Neighboring gene uncharacterized LOC112268445 Neighboring gene vomeronasal 1 receptor 21 pseudogene Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002223.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090004, AK092426, BC016304, DA837466
    Related
    ENST00000326972.12

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    13937307..14065984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182629.2: Suppressed sequence

    Description
    NM_182629.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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