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EP400P1 EP400 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 347918, updated on 25-Oct-2022

Summary

Official Symbol
EP400P1provided by HGNC
Official Full Name
EP400 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:26602
See related
Ensembl:ENSG00000291171 AllianceGenome:HGNC:26602
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EP400NL
Expression
Broad expression in testis (RPKM 5.0), spleen (RPKM 1.9) and 25 other tissues See more
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Genomic context

See EP400P1 in Genome Data Viewer
Location:
12q24.33
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (132084283..132126340)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (132133123..132175778)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (132568828..132610885)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene pseudouridine synthase 1 Neighboring gene E1A binding protein p400 Neighboring gene small nucleolar RNA, H/ACA box 49 Neighboring gene uncharacterized LOC107987169 Neighboring gene DEAD-box helicase 51 Neighboring gene nucleolar complex associated 4 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association meta-analysis of plasma Aβ peptides concentrations in the elderly.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • E1A binding protein p400 pseudogene
  • EP400 N-terminal like

Clone Names

  • FLJ33915, FLJ44224, FLJ46340, MGC87589, DKFZp434I225

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in histone H4 acetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of NuA4 histone acetyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of Swr1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003290.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK091234, AK126212, AK128208, BC015414
    Related
    ENST00000488030.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    132084283..132126340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160007.1 Reference GRCh38.p14 PATCHES

    Range
    15601..33369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    132133123..132175778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182613.1: Suppressed sequence

    Description
    NM_182613.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.