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DUBR DPPA2 upstream binding RNA [ Homo sapiens (human) ]

Gene ID: 344595, updated on 11-Jun-2021

Summary

Official Symbol
DUBRprovided by HGNC
Official Full Name
DPPA2 upstream binding RNAprovided by HGNC
Primary source
HGNC:HGNC:48569
See related
Ensembl:ENSG00000243701 MIM:616619
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DUM; LINC0883; LINC00883
Expression
Broad expression in ovary (RPKM 6.4), testis (RPKM 4.8) and 22 other tissues See more
Orthologs
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Genomic context

See DUBR in Genome Data Viewer
Location:
3q13.12
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (107240692..107326964)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (106959539..107045811)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 11 pseudogene Neighboring gene long intergenic non-protein coding RNA 882 Neighboring gene CS pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 4803

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Other Names

  • long intergenic non-protein coding RNA 883

Clone Names

  • FLJ31372

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028301.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC074043, BC039550, BU618315, DA339707
    Related
    ENST00000466734.6
  2. NR_028302.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses the same first exon as variant 1, but has a distinct 3' splice pattern.
    Source sequence(s)
    AC063944, AK309100
    Related
    ENST00000490441.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    107240692..107326964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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