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PTPN11P1 PTPN11 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 344593, updated on 10-Oct-2023

Summary

Official Symbol
PTPN11P1provided by HGNC
Official Full Name
PTPN11 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:56465
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See PTPN11P1 in Genome Data Viewer
Location:
3q13.12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107105314..107107165, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (109825002..109826853, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (106824161..106826012, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986021 Neighboring gene Sharpr-MPRA regulatory region 705 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:106641631-106642185 Neighboring gene RNA, U6 small nuclear 1308, pseudogene Neighboring gene long intergenic non-protein coding RNA 882 Neighboring gene NANOG hESC enhancer GRCh37_chr3:106861597-106862136 Neighboring gene uncharacterized LOC124909404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14585 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107003277-107004086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107004087-107004896 Neighboring gene DPPA2 upstream binding RNA Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:107027390-107028318 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107034942-107035442

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022213.3 

    Range
    101..1952
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    107105314..107107165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    109825002..109826853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)