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TCTEX1D4 Tctex1 domain containing 4 [ Homo sapiens (human) ]

Gene ID: 343521, updated on 17-Jun-2019

Summary

Official Symbol
TCTEX1D4provided by HGNC
Official Full Name
Tctex1 domain containing 4provided by HGNC
Primary source
HGNC:HGNC:32315
See related
Ensembl:ENSG00000188396 MIM:611713
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in esophagus (RPKM 3.3), appendix (RPKM 2.9) and 25 other tissues See more
Orthologs

Genomic context

See TCTEX1D4 in Genome Data Viewer
Location:
1p34.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (44805908..44809752, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (45271580..45273378, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein S15a pseudogene 11 Neighboring gene bestrophin 4 Neighboring gene uncharacterized LOC107984952 Neighboring gene polo like kinase 3 Neighboring gene BTB domain containing 19 Neighboring gene RNA, U5E small nuclear 6, pseudogene Neighboring gene patched 2 Neighboring gene eukaryotic translation initiation factor 2B subunit gamma Neighboring gene RNA, 5S ribosomal pseudogene 47

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein phosphatase 1 binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 
axoneme IEA
Inferred from Electronic Annotation
more info
 
microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
sperm flagellum IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tctex1 domain-containing protein 4
Names
Tctex2 beta
novel Tctex-1 family domain-containing protein
protein N22.1
tctex-2-beta

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013632.3NP_001013654.1  tctex1 domain-containing protein 4

    See identical proteins and their annotated locations for NP_001013654.1

    Status: VALIDATED

    Source sequence(s)
    AL592166, BC092499, DQ132441
    Consensus CDS
    CCDS30699.1
    UniProtKB/Swiss-Prot
    Q5JR98
    Related
    ENSP00000341803.2, ENST00000339355.2
    Conserved Domains (1) summary
    pfam03645
    Location:137219
    Tctex-1; Tctex-1 family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    44805908..44809752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001187.2XP_016856676.1  tctex1 domain-containing protein 4 isoform X2

  2. XM_006710614.4XP_006710677.1  tctex1 domain-containing protein 4 isoform X1

    Conserved Domains (1) summary
    pfam03645
    Location:195277
    Tctex-1; Tctex-1 family
  3. XM_011541375.2XP_011539677.1  tctex1 domain-containing protein 4 isoform X3

    See identical proteins and their annotated locations for XP_011539677.1

    UniProtKB/Swiss-Prot
    Q5JR98
    Conserved Domains (1) summary
    pfam03645
    Location:137219
    Tctex-1; Tctex-1 family
  4. XM_011541376.2XP_011539678.1  tctex1 domain-containing protein 4 isoform X3

    See identical proteins and their annotated locations for XP_011539678.1

    UniProtKB/Swiss-Prot
    Q5JR98
    Conserved Domains (1) summary
    pfam03645
    Location:137219
    Tctex-1; Tctex-1 family
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