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HNRNPCL1 heterogeneous nuclear ribonucleoprotein C like 1 [ Homo sapiens (human) ]

Gene ID: 343069, updated on 4-Jul-2021

Summary

Official Symbol
HNRNPCL1provided by HGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein C like 1provided by HGNC
Primary source
HGNC:HGNC:29295
See related
Ensembl:ENSG00000179172
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HNRPCL1
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See HNRNPCL1 in Genome Data Viewer
Location:
1p36.21
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (12847377..12848720, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (12907230..12908573, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene PRAME family member 11 Neighboring gene PRAME family member 30, pseudogene Neighboring gene PRAME family member 2 Neighboring gene PRAME family member 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
heterogeneous nuclear ribonucleoprotein C-like 1
Names
hnRNP C-like-1
hnRNP core protein C-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013631.3NP_001013653.1  heterogeneous nuclear ribonucleoprotein C-like 1

    See identical proteins and their annotated locations for NP_001013653.1

    Status: VALIDATED

    Source sequence(s)
    AC245034
    Consensus CDS
    CCDS30591.1
    UniProtKB/Swiss-Prot
    O60812
    Related
    ENSP00000365370.4, ENST00000317869.7
    Conserved Domains (2) summary
    cd12341
    Location:1683
    RRM_hnRNPC_like; RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins
    pfam11719
    Location:171288
    Drc1-Sld2; DNA replication and checkpoint protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    12847377..12848720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_012132914.1 Reference GRCh38.p13 PATCHES

    Range
    28890..30233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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