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ZSCAN5B zinc finger and SCAN domain containing 5B [ Homo sapiens (human) ]

Gene ID: 342933, updated on 7-Jun-2020

Summary

Official Symbol
ZSCAN5Bprovided by HGNC
Official Full Name
zinc finger and SCAN domain containing 5Bprovided by HGNC
Primary source
HGNC:HGNC:34246
See related
Ensembl:ENSG00000197213
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF371; ZNF495B
Expression
Biased expression in testis (RPKM 1.5) and prostate (RPKM 0.1) See more
Orthologs

Genomic context

See ZSCAN5B in Genome Data Viewer
Location:
19q13.43
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (56189689..56197890, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (56701058..56709207, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene galanin like peptide Neighboring gene CRISPRi-validated cis-regulatory element chr19.6329 Neighboring gene zinc finger and SCAN domain containing 5C Neighboring gene ribosomal protein L13 pseudogene 13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger and SCAN domain-containing protein 5B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080456.2NP_001073925.2  zinc finger and SCAN domain-containing protein 5B

    See identical proteins and their annotated locations for NP_001073925.2

    Status: VALIDATED

    Source sequence(s)
    AC024580, AI041519, BX094413, DW009806, EG328459
    Consensus CDS
    CCDS46203.1
    UniProtKB/Swiss-Prot
    A6NJL1
    Related
    ENSP00000351883.3, ENST00000358992.3
    Conserved Domains (5) summary
    smart00431
    Location:40139
    SCAN; leucine rich region
    cd07936
    Location:40124
    SCAN; SCAN oligomerization domain
    sd00017
    Location:385405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:355377
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:453478
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    56189689..56197890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005258864.3XP_005258921.2  zinc finger and SCAN domain-containing protein 5B isoform X1

  2. XM_006723189.3XP_006723252.1  zinc finger and SCAN domain-containing protein 5B isoform X2

    See identical proteins and their annotated locations for XP_006723252.1

    UniProtKB/Swiss-Prot
    A6NJL1
    Related
    ENSP00000466072.2, ENST00000586855.6
    Conserved Domains (5) summary
    smart00431
    Location:40139
    SCAN; leucine rich region
    cd07936
    Location:40124
    SCAN; SCAN oligomerization domain
    sd00017
    Location:385405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:355377
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:453478
    zf-H2C2_2; Zinc-finger double domain
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