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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001317955.2 → NP_001304884.1 isopentenyl-diphosphate Delta-isomerase 1 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains alternate 5' exon structure, and it thus differs in the 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a. Both variants 2 and 3 encode isoform b.
- Source sequence(s)
-
AC022536, AI305202, BC006999, BC057827, BX110963, DB479813, HY182673
- Consensus CDS
-
CCDS91201.1
- UniProtKB/Swiss-Prot
- B4E155, Q13907, Q32Q13, Q53GQ6, Q86U81, Q8WUX8, Q96IZ4, Q9BQ74
- UniProtKB/TrEMBL
-
A0A8Q3WKR8
- Conserved Domains (1) summary
-
- cl00447
Location:22 → 228
- Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
-
NM_001317956.2 → NP_001304885.1 isopentenyl-diphosphate Delta-isomerase 1 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains an alternate 5' terminal exon, and it thus differs in the 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a. Both variants 2 and 3 encode isoform b.
- Source sequence(s)
-
AC022536, AI305202, BC006999, BC057827, BI600349, BX110963, CD251816, DA185312
- Consensus CDS
-
CCDS91201.1
- UniProtKB/Swiss-Prot
- B4E155, Q13907, Q32Q13, Q53GQ6, Q86U81, Q8WUX8, Q96IZ4, Q9BQ74
- UniProtKB/TrEMBL
-
A0A8Q3WKR8
- Related
- ENSP00000401879.2, ENST00000429642.2
- Conserved Domains (1) summary
-
- cl00447
Location:22 → 228
- Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
-
NM_001317957.2 → NP_001304886.1 isopentenyl-diphosphate Delta-isomerase 1 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) contains an alternate 5' terminal exon and lacks an exon in the 5' coding region, and it thus differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (c) has a distinct N-terminus and is shorter than isoform a.
- Source sequence(s)
-
AC022536, AI305202, BC006999, BC057827, BI600349, BX110963, DA185312, DA792902
- UniProtKB/Swiss-Prot
-
Q13907
- Conserved Domains (1) summary
-
- cl00447
Location:18 → 198
- Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
-
NM_004508.4 → NP_004499.2 isopentenyl-diphosphate Delta-isomerase 1 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AC022536
- Consensus CDS
-
CCDS7056.1
- UniProtKB/Swiss-Prot
-
Q13907
- Related
- ENSP00000370748.3, ENST00000381344.8
- Conserved Domains (2) summary
-
- COG1443
Location:76 → 265
- Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
- cl00447
Location:78 → 284
- Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
RNA
-
NR_134300.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains alternate 5' exon structure and lacks an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks an ORF that is in-frame with the supported coding region.
- Source sequence(s)
-
AC022536, AI305202, BC006999, BX110963, DA842794, DB479813, HY182673
-
NR_134301.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI305202, AK311110, BC006999, BX110963, CN481934, DA289206
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
1039152..1056704 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047425176.1 → XP_047281132.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Q3WKR8
-
XM_024447979.2 → XP_024303747.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X3
- Conserved Domains (1) summary
-
- cl00447
Location:13 → 191
- Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
-
XM_017016191.3 → XP_016871680.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X2
- UniProtKB/Swiss-Prot
- B4E155, Q13907, Q32Q13, Q53GQ6, Q86U81, Q8WUX8, Q96IZ4, Q9BQ74
-
XM_024447980.2 → XP_024303748.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X4
- Conserved Domains (1) summary
-
- cl00447
Location:1 → 187
- Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
1036296..1053319 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054365753.1 → XP_054221728.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Q3WKR8
-
XM_054365755.1 → XP_054221730.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X3
-
XM_054365754.1 → XP_054221729.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X2
-
XM_054365756.1 → XP_054221731.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X4