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APOC1P1 apolipoprotein C1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 342, updated on 23-Nov-2021

Summary

Official Symbol
APOC1P1provided by HGNC
Official Full Name
apolipoprotein C1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:608
See related
Ensembl:ENSG00000214855
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward liver (RPKM 82.5) See more
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Genomic context

See APOC1P1 in Genome Data Viewer
Location:
19q13.32
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (44926803..44931386)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (45430060..45434643)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene apolipoprotein E Neighboring gene APOC1 promoter region Neighboring gene apolipoprotein C1 Neighboring gene APOC4-APOC2 readthrough (NMD candidate) Neighboring gene apolipoprotein C4 Neighboring gene apolipoprotein C2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028412.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC011481, AV645786, DA638554
  2. NR_028413.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate internal splice site and is shorter, compared to variant 1.
    Source sequence(s)
    AC011481, CB162526, DA638554
  3. NR_028414.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal segment, uses an alternate internal splice site and is shorter, compared to variant 1.
    Source sequence(s)
    AC011481, DA636997, DA638554
    Related
    ENST00000507983.7

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    44926803..44931386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_009854.1: Suppressed sequence

    Description
    NG_009854.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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