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RTL4 retrotransposon Gag like 4 [ Homo sapiens (human) ]

Gene ID: 340595, updated on 12-Oct-2019

Summary

Official Symbol
RTL4provided by HGNC
Official Full Name
retrotransposon Gag like 4provided by HGNC
Primary source
HGNC:HGNC:25214
See related
Ensembl:ENSG00000187823
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Mar4; Mart4; SIRH11; ZCCHC16
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See RTL4 in Genome Data Viewer
Location:
Xq23
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (112083025..112457245)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (111326253..111700473)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ALG13 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene TRPC5 opposite strand Neighboring gene divergent-paired related homeobox pseudogene 7 Neighboring gene coiled-coil domain containing 121 pseudogene Neighboring gene LHFPL tetraspan subfamily member 1 Neighboring gene high mobility group box 3 pseudogene 30

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ46608

Gene Ontology Provided by GOA

Function Evidence Code Pubs
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cognition IEA
Inferred from Electronic Annotation
more info
 
norepinephrine metabolic process IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
retrotransposon Gag-like protein 4
Names
Sushi-Ichi retrotransposon homolog 11
mammalian retrotransposon-derived 4
mammalian retrotransposon-derived protein 4
zinc finger CCHC domain-containing protein 16
zinc finger CCHC-type containing 16
zinc finger, CCHC domain containing 16

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004308.2NP_001004308.2  retrotransposon Gag-like protein 4

    See identical proteins and their annotated locations for NP_001004308.2

    Status: VALIDATED

    Source sequence(s)
    AK128465, BX088563
    Consensus CDS
    CCDS35369.1
    UniProtKB/Swiss-Prot
    Q6ZR62
    Related
    ENSP00000340590.2, ENST00000340433.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    112083025..112457245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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