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CA5BP1 carbonic anhydrase 5B pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 340591, updated on 23-Nov-2021

Summary

Official Symbol
CA5BP1provided by HGNC
Official Full Name
carbonic anhydrase 5B pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:29544
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CA5BL; CA5BP; PRO2325
Expression
Ubiquitous expression in ovary (RPKM 7.6), bone marrow (RPKM 6.8) and 25 other tissues See more
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Genomic context

See CA5BP1 in Genome Data Viewer
Location:
Xp22.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (15674916..15703721)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (15693039..15721844)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene collectrin, amino acid transport regulator Neighboring gene prothymosin alpha pseudogene 14 Neighboring gene nonconserved acetylation island sequence 104 enhancer Neighboring gene CA5BP1-CA5B readthrough Neighboring gene carbonic anhydrase 5B Neighboring gene inactivation escape 2 Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene adaptor related protein complex 1 subunit sigma 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • carbonic anhydrase VB pseudogene 1
  • carbonic dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026551.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112497, CD675860, DB271346
  2. NR_160541.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112497, DB271346
  3. NR_160542.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112497
  4. NR_160543.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112497

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    15674916..15703721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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