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CTAGE6 CTAGE family member 6 [ Homo sapiens (human) ]

Gene ID: 340307, updated on 11-Sep-2019

Summary

Official Symbol
CTAGE6provided by HGNC
Official Full Name
CTAGE family member 6provided by HGNC
Primary source
HGNC:HGNC:28644
See related
Ensembl:ENSG00000271321
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTAGE6P

Genomic context

See CTAGE6 in Genome Data Viewer
Location:
7q35
Exon count:
1
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (143755089..143757696, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (143452182..143454843, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene TRPM8 channel associated factor 2 Neighboring gene TRPM8 channel associated factor 2C Neighboring gene RNA, U6 small nuclear 267, pseudogene Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 Neighboring gene ribosomal protein L26 pseudogene 24

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC41943

Gene Ontology Provided by GOA

Process Evidence Code Pubs
ER to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
biological_process ND
No biological Data available
more info
 
cargo loading into vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cTAGE family member 6
Names
CTAGE family, member 6, pseudogene
cutaneous T-cell lymphoma-associated antigen 6
protein cTAGE-6
putative protein cTAGE-6

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_065172.1 RefSeqGene

    Range
    5055..7662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_178561.5NP_848656.2  cTAGE family member 6

    See identical proteins and their annotated locations for NP_848656.2

    Status: REVIEWED

    Source sequence(s)
    AC106862, BC043153
    Consensus CDS
    CCDS64790.1
    UniProtKB/Swiss-Prot
    Q86UF2
    Related
    ENSP00000474388.1, ENST00000470691.2
    Conserved Domains (3) summary
    pfam10211
    Location:157229
    Ax_dynein_light; Axonemal dynein light chain
    pfam14662
    Location:107298
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
    pfam15233
    Location:338445
    SYCE1; Synaptonemal complex central element protein 1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    143755089..143757696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_018654714.1 Reference GRCh38.p13 PATCHES

    Range
    299410..302017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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