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FAM170A family with sequence similarity 170 member A [ Homo sapiens (human) ]

Gene ID: 340069, updated on 11-Sep-2019

Summary

Official Symbol
FAM170Aprovided by HGNC
Official Full Name
family with sequence similarity 170 member Aprovided by HGNC
Primary source
HGNC:HGNC:27963
See related
Ensembl:ENSG00000164334 MIM:618401
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNFD
Expression
Restricted expression toward testis (RPKM 8.0) See more
Orthologs

Genomic context

See FAM170A in Genome Data Viewer
Location:
5q23.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (119629558..119635822)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (118965254..118971517)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986444 Neighboring gene fatty acid binding protein 5 pseudogene 6 Neighboring gene mitochondrial ribosomal protein L10 pseudogene Neighboring gene uncharacterized LOC105379144

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC149385

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
positive regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
protein FAM170A
Names
Znf domain containing protein
zinc finger domain-containing protein
zinc finger protein ZNFD

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163991.1NP_001157463.1  protein FAM170A isoform 2

    See identical proteins and their annotated locations for NP_001157463.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment near the N-terminus, compared to isoform 1.
    Source sequence(s)
    AY692447
    Consensus CDS
    CCDS54889.1
    UniProtKB/Swiss-Prot
    A1A519
    Related
    ENSP00000368873.3, ENST00000379555.7
  2. NM_001367956.1NP_001354885.1  protein FAM170A isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC010409, BC128243
    Related
    ENSP00000422684.1, ENST00000515256.5
  3. NM_182761.3NP_877438.2  protein FAM170A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AY692447, BC040622
    Consensus CDS
    CCDS43353.1
    UniProtKB/Swiss-Prot
    A1A519
    Related
    ENSP00000482552.1, ENST00000613773.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    119629558..119635822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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