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H1-10-AS1 H1-10 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 339942, updated on 13-May-2022

Summary

Official Symbol
H1-10-AS1provided by HGNC
Official Full Name
H1-10 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27953
See related
AllianceGenome:HGNC:27953
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C3orf47; H1FX-AS1
Expression
Ubiquitous expression in fat (RPKM 3.5), prostate (RPKM 1.9) and 23 other tissues See more
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Genomic context

See H1-10-AS1 in Genome Data Viewer
Location:
3q21.3
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (129316271..129324569)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (132061069..132069367)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (129035114..129043412)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit gamma 1 Neighboring gene microRNA 6826 Neighboring gene 5-hydroxymethylcytosine binding, ES cell specific Neighboring gene CRISPRi-FlowFISH-validated H1-10 regulatory element Neighboring gene H1.10 linker histone Neighboring gene nucleoporin 210 pseudogene 3 Neighboring gene MARK2 pseudogene 3 Neighboring gene MARK2 pseudogene 19

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • H1FX antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ34151, MGC126788

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC137695, AL040547, AL353963, BC093941, BM709882, BU732259, DA883170

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    129316271..129324569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    132061069..132069367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001025468.1: Suppressed sequence

    Description
    NM_001025468.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein and the transcript is a nonsense-mediated mRNA decay (NMD) candidate.