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LINC00880 long intergenic non-protein coding RNA 880 [ Homo sapiens (human) ]

Gene ID: 339894, updated on 13-May-2022

Summary

Official Symbol
LINC00880provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 880provided by HGNC
Primary source
HGNC:HGNC:27948
See related
Ensembl:ENSG00000243629 AllianceGenome:HGNC:27948
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.2), lymph node (RPKM 0.4) and 1 other tissue See more
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Genomic context

See LINC00880 in Genome Data Viewer
Location:
3q25.31
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (157081667..157123002, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (159856205..159897543, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (156799456..156840791, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene leucine, glutamate and lysine rich 1 Neighboring gene CRADD pseudogene 1 Neighboring gene RN7SK pseudogene 177 Neighboring gene long intergenic non-protein coding RNA 2029 Neighboring gene long intergenic non-protein coding RNA 881 Neighboring gene Sharpr-MPRA regulatory region 13439 Neighboring gene cyclin L1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.
EBI GWAS Catalog

General gene information

Markers

Clone Names

  • FLJ18260

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034007.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117392, AK311218, BC040669
    Related
    ENST00000471357.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    157081667..157123002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    159856205..159897543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)