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LINC00299 long intergenic non-protein coding RNA 299 [ Homo sapiens (human) ]

Gene ID: 339789, updated on 23-Nov-2021

Summary

Official Symbol
LINC00299provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 299provided by HGNC
Primary source
HGNC:HGNC:27940
See related
Ensembl:ENSG00000236790
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf46; NCRNA00299
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00299 in Genome Data Viewer
Location:
2p25.1
Exon count:
12
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (8007771..8328419, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (8147901..8468549, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373409 Neighboring gene uncharacterized LOC101929551 Neighboring gene long intergenic non-protein coding RNA 298 Neighboring gene CRISPRi-validated cis-regulatory element chr2.183 Neighboring gene CRISPRi-validated cis-regulatory element chr2.184

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

Associated conditions

Description Tests
A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.
GeneReviews: Not available
A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ45673

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034135.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007464, AC092177
    Related
    ENST00000430192.5
  2. NR_152741.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092177, U91324
    Related
    ENST00000442956.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    8007771..8328419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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