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SMIM45 small integral membrane protein 45 [ Homo sapiens (human) ]

Gene ID: 339674, updated on 26-Oct-2022

Summary

Official Symbol
SMIM45provided by HGNC
Official Full Name
small integral membrane protein 45provided by HGNC
Primary source
HGNC:HGNC:27930
See related
Ensembl:ENSG00000205704 AllianceGenome:HGNC:27930
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00634; BK250D10.8
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in brain (RPKM 7.1), adrenal (RPKM 0.9) and 1 other tissue See more
Orthologs
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Genomic context

See SMIM45 in Genome Data Viewer
Location:
22q13.2
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (41946949..41958939)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (42426562..42438557)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (42342953..42354943)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 13C Neighboring gene microRNA 378i Neighboring gene CAGE-defined B cell enhancer downstream of CENPM Neighboring gene centromere protein M Neighboring gene septin 3 Neighboring gene solute carrier family 25 member 5 pseudogene 1 Neighboring gene WBP2 N-terminal like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
protein SMIM45
Names
long intergenic non-protein coding RNA 634

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395940.1NP_001382869.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Related
    ENSP00000499702.1, ENST00000381348.4
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  2. NM_001395941.1NP_001382870.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  3. NM_001395942.1NP_001382871.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  4. NM_001395943.1NP_001382872.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  5. NM_001395944.1NP_001382873.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  6. NM_001395945.1NP_001382874.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  7. NM_001395946.1NP_001382875.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  8. NM_001395947.1NP_001382876.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  9. NM_001395948.1NP_001382877.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  10. NM_001395949.1NP_001382878.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  11. NM_001395950.1NP_001382879.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  12. NM_001395951.1NP_001382880.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase
  13. NM_001395952.1NP_001382881.1  protein SMIM45

    Status: VALIDATED

    Source sequence(s)
    Z99716
    Consensus CDS
    CCDS93175.1
    UniProtKB/TrEMBL
    A0A590UK49
    Conserved Domains (1) summary
    PLN02960
    Location:2952
    PLN02960; alpha-amylase

RNA

  1. NR_172941.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z99716

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    41946949..41958939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    42426562..42438557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)