U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02796 long intergenic non-protein coding RNA 2796 [ Homo sapiens (human) ]

Gene ID: 339468, updated on 10-Oct-2023

Summary

Official Symbol
LINC02796provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2796provided by HGNC
Primary source
HGNC:HGNC:27918
See related
AllianceGenome:HGNC:27918
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC02796 in Genome Data Viewer
Location:
1p31.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (72764888..72784098)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (72598434..72617648)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378797 Neighboring gene uncharacterized LOC105378796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:73113838-73114818 Neighboring gene uncharacterized LOC105378798 Neighboring gene RNA, U6 small nuclear 1246, pseudogene Neighboring gene long intergenic non-protein coding RNA 2797 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:73364724-73365332 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73445932-73446458 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73446459-73446984 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:73449654-73450520 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73452190-73452910 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73452911-73453630 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73453631-73454350 Neighboring gene keratin 8 pseudogene 21

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187240.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139149, AL583808

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    72764888..72784098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    72598434..72617648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)