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C1orf174 chromosome 1 open reading frame 174 [ Homo sapiens (human) ]

Gene ID: 339448, updated on 13-Mar-2020

Summary

Official Symbol
C1orf174provided by HGNC
Official Full Name
chromosome 1 open reading frame 174provided by HGNC
Primary source
HGNC:HGNC:27915
See related
Ensembl:ENSG00000198912
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 4.6), appendix (RPKM 4.0) and 25 other tissues See more
Orthologs

Genomic context

See C1orf174 in Genome Data Viewer
Location:
1p36.32
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (3889133..3900293, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (3805697..3816857, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene DNA fragmentation factor subunit beta Neighboring gene uncharacterized LOC107984910 Neighboring gene long intergenic non-protein coding RNA 1134 Neighboring gene long intergenic non-protein coding RNA 1346 Neighboring gene long intergenic non-protein coding RNA 1345

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
UPF0688 protein C1orf174
Names
RP13-531C17.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207356.3NP_997239.2  UPF0688 protein C1orf174

    See identical proteins and their annotated locations for NP_997239.2

    Status: VALIDATED

    Source sequence(s)
    AL691523, BC067302
    Consensus CDS
    CCDS53.1
    UniProtKB/Swiss-Prot
    Q8IYL3
    Related
    ENSP00000355306.3, ENST00000361605.4
    Conserved Domains (1) summary
    pfam15772
    Location:6231
    UPF0688; UPF0688 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    3889133..3900293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005244743.3XP_005244800.1  UPF0688 protein C1orf174 isoform X1

    See identical proteins and their annotated locations for XP_005244800.1

    Conserved Domains (1) summary
    pfam15772
    Location:54242
    UPF0688; UPF0688 family
  2. XM_011541323.2XP_011539625.1  UPF0688 protein C1orf174 isoform X1

    See identical proteins and their annotated locations for XP_011539625.1

    Conserved Domains (1) summary
    pfam15772
    Location:54242
    UPF0688; UPF0688 family
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