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LINC01343 long intergenic non-protein coding RNA 1343 [ Homo sapiens (human) ]

Gene ID: 339442, updated on 2-Oct-2022

Summary

Official Symbol
LINC01343provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1343provided by HGNC
Primary source
HGNC:HGNC:50553
See related
Ensembl:ENSG00000237290 AllianceGenome:HGNC:50553
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01343 in Genome Data Viewer
Location:
1p34.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38209034..38214767, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (38076242..38081975, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38674706..38680439, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR3659 host gene Neighboring gene VISTA enhancer hs238 Neighboring gene long intergenic non-protein coding RNA 2786 Neighboring gene uncharacterized LOC105378654 Neighboring gene VISTA enhancer hs1001 Neighboring gene VISTA enhancer hs2088

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038928.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390839, BC042675, BI827914
    Related
    ENST00000431311.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    38209034..38214767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    38076242..38081975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)