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MYPOP Myb related transcription factor, partner of profilin [ Homo sapiens (human) ]

Gene ID: 339344, updated on 7-Jun-2020

Summary

Official Symbol
MYPOPprovided by HGNC
Official Full Name
Myb related transcription factor, partner of profilinprovided by HGNC
Primary source
HGNC:HGNC:20178
See related
Ensembl:ENSG00000176182 MIM:617861
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
P42pop
Expression
Ubiquitous expression in brain (RPKM 2.5), spleen (RPKM 2.4) and 25 other tissues See more
Orthologs

Genomic context

See MYPOP in Genome Data Viewer
Location:
19q13.32
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (45890020..45902619, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (46393281..46405862, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene HNF1 motif-containing MPRA enhancer 100 Neighboring gene interferon regulatory factor 2 binding protein 1 Neighboring gene nanos C2HC-type zinc finger 2 Neighboring gene NOVA alternative splicing regulator 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
myb-related transcription factor, partner of profilin
Names
myb-related protein p42POP
p42 Myb-related transcription factor, partner of profilin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012643.4NP_001012661.1  myb-related transcription factor, partner of profilin

    See identical proteins and their annotated locations for NP_001012661.1

    Status: VALIDATED

    Source sequence(s)
    AC008623, BC044311, BU196283
    Consensus CDS
    CCDS33055.1
    UniProtKB/Swiss-Prot
    Q86VE0
    Related
    ENSP00000325402.4, ENST00000322217.6
    Conserved Domains (1) summary
    pfam13873
    Location:1692
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    45890020..45902619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017026743.2XP_016882232.1  myb-related transcription factor, partner of profilin isoform X2

  2. XM_017026742.2XP_016882231.1  myb-related transcription factor, partner of profilin isoform X1

  3. XM_024451484.1XP_024307252.1  myb-related transcription factor, partner of profilin isoform X3

    Conserved Domains (1) summary
    pfam13873
    Location:159235
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
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