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CCDC137 coiled-coil domain containing 137 [ Homo sapiens (human) ]

Gene ID: 339230, updated on 5-Aug-2018

Summary

Official Symbol
CCDC137provided by HGNC
Official Full Name
coiled-coil domain containing 137provided by HGNC
Primary source
HGNC:HGNC:33451
See related
Ensembl:ENSG00000185298 MIM:614271; Vega:OTTHUMG00000178064
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RaRF
Expression
Ubiquitous expression in skin (RPKM 7.7), lymph node (RPKM 6.5) and 25 other tissues See more
Orthologs

Genomic context

See CCDC137 in Genome Data Viewer
Location:
17q25.3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 17 NC_000017.11 (81666697..81673907)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (79633761..79640937)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6G Neighboring gene oxidoreductase like domain containing 1 Neighboring gene ADP ribosylation factor like GTPase 16 Neighboring gene hepatocyte growth factor-regulated tyrosine kinase substrate Neighboring gene microRNA 6786

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC16597

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
chromosome IDA
Inferred from Direct Assay
more info
PubMed 
fibrillar center IDA
Inferred from Direct Assay
more info
 
nucleolus IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 137
Names
hepatocellular carcinoma related protein 2
retinoic acid resistance factor

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199287.2NP_954981.1  coiled-coil domain-containing protein 137

    See identical proteins and their annotated locations for NP_954981.1

    Status: VALIDATED

    Source sequence(s)
    AC139530, BC009369, BM548065
    Consensus CDS
    CCDS42400.1
    UniProtKB/Swiss-Prot
    Q6PK04
    Related
    ENSP00000329360.8, OTTHUMP00000258426, ENST00000329214.12, OTTHUMT00000440387

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p12 Primary Assembly

    Range
    81666697..81673907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017024573.1XP_016880062.1  coiled-coil domain-containing protein 137 isoform X1

  2. XM_011524738.2XP_011523040.1  coiled-coil domain-containing protein 137 isoform X2

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