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LINC00550 long intergenic non-protein coding RNA 550 [ Homo sapiens (human) ]

Gene ID: 338862, updated on 10-Oct-2023

Summary

Official Symbol
LINC00550provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 550provided by HGNC
Primary source
HGNC:HGNC:43688
See related
Ensembl:ENSG00000281778 AllianceGenome:HGNC:43688
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00550 in Genome Data Viewer
Location:
13q21.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (68861284..68885325, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (68083311..68107352, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (69435416..69459457, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L12 pseudogene 34 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:69282146-69282716 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:69282717-69283287 Neighboring gene RNA, 7SL, cytoplasmic 761, pseudogene Neighboring gene uncharacterized LOC105370254 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:69462586-69463785 Neighboring gene long intergenic non-protein coding RNA 2342 Neighboring gene zinc finger DHHC-type containing 20 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:69581239-69581790 Neighboring gene small nuclear ribonucleoprotein polypeptide F pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038878.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL450445
    Related
    ENST00000629293.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    68861284..68885325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    68083311..68107352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)