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LINC01089 long intergenic non-protein coding RNA 1089 [ Homo sapiens (human) ]

Gene ID: 338799, updated on 11-Jun-2021

Summary

Official Symbol
LINC01089provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1089provided by HGNC
Primary source
HGNC:HGNC:27886
See related
Ensembl:ENSG00000212694
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LIMT
Expression
Ubiquitous expression in spleen (RPKM 8.0), prostate (RPKM 8.0) and 24 other tissues See more
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Genomic context

See LINC01089 in Genome Data Viewer
Location:
12q24.31
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (121795267..121802946, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (122233173..122240852, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 120B Neighboring gene uncharacterized LOC107984442 Neighboring gene ras homolog family member F, filopodia associated Neighboring gene SET domain containing 1B, histone lysine methyltransferase Neighboring gene uncharacterized LOC105370035 Neighboring gene 4-hydroxyphenylpyruvate dioxygenase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Potential readthrough

Included gene: RHOF

Other Names

  • long non coding RNA inhibiting metastasis

Clone Names

  • FLJ37163, FLJ38855, AC084018.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002809.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC038786, BM669713
  2. NR_152735.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084018
    Related
    ENST00000542933.5
  3. NR_152736.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK311480, BM669713, CN398873
  4. NR_152737.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084018
  5. NR_152738.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084018, AK095700, AK311480, BM669713, CD516035
  6. NR_152739.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084018
  7. NR_152740.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084018, AK095700, AK311480, BG035222, BM669713

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    121795267..121802946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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