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C1QL4 complement C1q like 4 [ Homo sapiens (human) ]

Gene ID: 338761, updated on 3-Oct-2020

Summary

Official Symbol
C1QL4provided by HGNC
Official Full Name
complement C1q like 4provided by HGNC
Primary source
HGNC:HGNC:31416
See related
Ensembl:ENSG00000186897 MIM:615229
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTRP11; C1QTNF11
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See C1QL4 in Genome Data Viewer
Location:
12q13.12
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (49332409..49337195, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (49726200..49730971, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927267 Neighboring gene peripherin Neighboring gene trophinin associated protein Neighboring gene DnaJ heat shock protein family (Hsp40) member C22 Neighboring gene spermatogenesis associated serine rich 2 Neighboring gene FGFR1 oncogene partner 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC131708

Gene Ontology Provided by GOA

Function Evidence Code Pubs
identical protein binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
negative regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 
negative regulation of fat cell differentiation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of fibroblast proliferation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
extracellular space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
complement C1q-like protein 4
Names
C1q and tumor necrosis factor-related protein 11
C1q/TNF-related protein 11
complement component 1, q subcomponent like 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008223.2NP_001008224.1  complement C1q-like protein 4 precursor

    See identical proteins and their annotated locations for NP_001008224.1

    Status: VALIDATED

    Source sequence(s)
    AC125611, AF466366
    Consensus CDS
    CCDS31793.1
    UniProtKB/Swiss-Prot
    Q86Z23
    Related
    ENSP00000335285.3, ENST00000334221.5
    Conserved Domains (1) summary
    pfam00386
    Location:111235
    C1q; C1q domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    49332409..49337195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011538270.2XP_011536572.1  complement C1q-like protein 4 isoform X1

    Conserved Domains (1) summary
    pfam00386
    Location:111216
    C1q; C1q domain
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