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KCNQ1-AS1 KCNQ1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 338653, updated on 13-May-2022

Summary

Official Symbol
KCNQ1-AS1provided by HGNC
Official Full Name
KCNQ1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:42790
See related
Ensembl:ENSG00000229414 AllianceGenome:HGNC:42790
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See KCNQ1-AS1 in Genome Data Viewer
Location:
11p15.4
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (2840135..2861569, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (2929449..2950789, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (2861365..2882799, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily Q member 1 Neighboring gene uncharacterized LOC124902614 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 18 Neighboring gene CRISPRi-validated cis-regulatory element chr11.592 Neighboring gene KCNQ1 downstream neighbor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • KCNQ1 antisense RNA 1 (non-protein coding)

Clone Names

  • AC013791.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130721.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013791
    Related
    ENST00000440887.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    2840135..2861569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187585.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    72299..93727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    2929449..2950789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)