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bmper BMP binding endothelial regulator [ Danio rerio (zebrafish) ]

Gene ID: 338246, updated on 6-May-2021

Summary

Official Symbol
bmperprovided by ZNC
Official Full Name
BMP binding endothelial regulatorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030219-146
See related
Ensembl:ENSDARG00000101980
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cv; cvl2; id:ibd50; id:ibd5071
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See bmper in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (7154298..7195677)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (7213112..7278331)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (9250987..9292160, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene ELL associated factor 1 Neighboring gene Bardet-Biedl syndrome 9 Neighboring gene si:ch73-341k19.1 Neighboring gene uncharacterized LOC101882543 Neighboring gene 5'-nucleotidase, cytosolic IIIA

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables extracellular matrix binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
BMP-binding endothelial regulator protein
Names
crossveinless 2
cv2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020487.2NP_001018323.2  BMP-binding endothelial regulator protein precursor

    See identical proteins and their annotated locations for NP_001018323.2

    Status: PROVISIONAL

    Source sequence(s)
    BC146642
    UniProtKB/TrEMBL
    A6H8K2
    Related
    ENSDARP00000134708.1, ENSDART00000168830.2
    Conserved Domains (5) summary
    pfam00093
    Location:152210
    VWC; von Willebrand factor type C domain
    pfam00094
    Location:348490
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:612665
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:539607
    C8; C8 domain
    cl17735
    Location:285341
    VWC; von Willebrand factor type C domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    7154298..7195677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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