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vri vrille [ Drosophila melanogaster (fruit fly) ]

Gene ID: 33759, updated on 28-Aug-2019

Summary

Official Symbol
vriprovided by FlyBase
Official Full Name
vrilleprovided by FlyBase
Primary source
FLYBASE:FBgn0016076
Locus tag
Dmel_CG14029
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
argo; CG14029; DM16; Dmel\CG14029; jf23; l(2)25Db; l(2)jf23; mat(2)ea-G; mat(2)earlyRS32; mel_vri; Vri; VRI

Genomic context

See vri in Genome Data Viewer
Location:
25D4-25D5; 2-16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.26 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (5288944..5311223)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (5288944..5311223)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Bub1 kinase Neighboring gene long non-coding RNA:CR44743 Neighboring gene long non-coding RNA:CR44742 Neighboring gene long non-coding RNA:CR45730 Neighboring gene uncharacterized protein Neighboring gene Nuclear receptor coactivator 6 Neighboring gene long non-coding RNA:CR44985

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Circadian rhythm - fly, organism-specific biosystem (from KEGG)
    Circadian rhythm - fly, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes ...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
cellular process IMP
Inferred from Mutant Phenotype
more info
PubMed 
chaeta morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
circadian rhythm IDA
Inferred from Direct Assay
more info
PubMed 
circadian rhythm NAS
Non-traceable Author Statement
more info
PubMed 
circadian rhythm TAS
Traceable Author Statement
more info
PubMed 
imaginal disc-derived wing hair organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
locomotor rhythm NAS
Non-traceable Author Statement
more info
PubMed 
multicellular organism aging IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development TAS
Traceable Author Statement
more info
PubMed 
open tracheal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of heart contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rhythmic behavior TAS
Traceable Author Statement
more info
PubMed 
transcription, DNA-templated NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
nucleus HDA PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
vrille
Names
CG14029-PA
CG14029-PC
CG14029-PD
CG14029-PE
CG14029-PF
lethal(2)25Db
maternal effect early arrest G
vri-PA
vri-PC
vri-PD
vri-PE
vri-PF

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    5288944..5311223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001298694.1NP_001285623.1  vrille, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285623.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KTN9
    Related
    FBpp0309715, FBtr0342936
    Conserved Domains (1) summary
    cd14694
    Location:119178
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
  2. NM_164639.2NP_723075.1  vrille, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_723075.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KTN9
    Related
    FBpp0078705, FBtr0079070
    Conserved Domains (1) summary
    cd14694
    Location:119178
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
  3. NM_001298695.1NP_001285624.1  vrille, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285624.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VMS4
    Related
    FBpp0312171, FBtr0346579
    Conserved Domains (1) summary
    cd14694
    Location:238297
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
  4. NM_057843.4NP_477191.1  vrille, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_477191.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VMS4
    Related
    FBpp0078706, FBtr0079071
    Conserved Domains (1) summary
    cd14694
    Location:238297
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
  5. NM_001144320.2NP_001137792.1  vrille, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137792.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VMS4
    Related
    FBpp0289297, FBtr0300020
    Conserved Domains (1) summary
    cd14694
    Location:238297
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
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