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synj1 synaptojanin 1 [ Danio rerio (zebrafish) ]

Gene ID: 337236, updated on 6-May-2021

Summary

Official Symbol
synj1provided by ZNC
Official Full Name
synaptojanin 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9180
See related
Ensembl:ENSDARG00000025011
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
n; s; nrc; sla; fb02f11; fi15a11; wu:fb02f11; wu:fi15a11
Orthologs
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Genomic context

See synj1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
35
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (26515941..26569350)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (26554231..26607637)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (27150356..27203780)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene protocadherin-16-like Neighboring gene si:dkey-5g14.1 Neighboring gene solute carrier family 9 member 6b Neighboring gene four and a half LIM domains 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables SH3 domain binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol phosphate 4-phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphatidylinositol phosphate 5-phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphatidylinositol phosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables phosphoric ester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
synaptojanin-1
Names
no optokinetic response c
slacker
slak
NP_001007031.2
XP_005155414.1
XP_005155415.1
XP_005155416.1
XP_005155417.1
XP_005155418.1
XP_005155419.1
XP_005155420.1
XP_005155421.1
XP_009303582.1
XP_009303583.1
XP_009303584.1
XP_021334787.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007030.2NP_001007031.2  synaptojanin-1

    Status: VALIDATED

    Source sequence(s)
    CT027781
    UniProtKB/TrEMBL
    E9QHF3
    Related
    ENSDARP00000122252.2, ENSDART00000134276.4

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    26515941..26569350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305307.3XP_009303582.1  synaptojanin-1 isoform X3

    Conserved Domains (3) summary
    cd09098
    Location:530865
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8641002
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_005155357.4XP_005155414.1  synaptojanin-1 isoform X1

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. XM_005155361.4XP_005155418.1  synaptojanin-1 isoform X6

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. XM_009305308.3XP_009303583.1  synaptojanin-1 isoform X8

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. XM_005155362.4XP_005155419.1  synaptojanin-1 isoform X7

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. XM_005155363.4XP_005155420.1  synaptojanin-1 isoform X9

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  7. XM_005155359.4XP_005155416.1  synaptojanin-1 isoform X4

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  8. XM_005155358.4XP_005155415.1  synaptojanin-1 isoform X2

    Conserved Domains (3) summary
    cd09098
    Location:535870
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8691007
    RRM_SF; RNA recognition motif (RRM) superfamily
  9. XM_005155360.4XP_005155417.1  synaptojanin-1 isoform X5

    Conserved Domains (3) summary
    cd09098
    Location:535870
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8691007
    RRM_SF; RNA recognition motif (RRM) superfamily
  10. XM_005155364.4XP_005155421.1  synaptojanin-1 isoform X10

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  11. XM_009305309.3XP_009303584.1  synaptojanin-1 isoform X11

    Conserved Domains (3) summary
    cd09098
    Location:538873
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8721010
    RRM_SF; RNA recognition motif (RRM) superfamily
  12. XM_021479112.1XP_021334787.1  synaptojanin-1 isoform X12

    Conserved Domains (3) summary
    cd09098
    Location:14349
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    cl17169
    Location:348486
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26464
    Location:516846
    Atrophin-1; Atrophin-1 family

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394786.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    350614..400479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395288.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    92122..144960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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