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rps3 ribosomal protein S3 [ Danio rerio (zebrafish) ]

Gene ID: 336550, updated on 6-May-2021

Summary

Official Symbol
rps3provided by ZNC
Official Full Name
ribosomal protein S3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8494
See related
Ensembl:ENSDARG00000103007
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb13d09; zgc:56088; wu:fb13d09
Orthologs
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Genomic context

See rps3 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (3038173..3049799)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (3045142..3056768, complement)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (47351163..47362789, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene F-BAR and double SH3 domains protein 2-like Neighboring gene NACHT and WD repeat domain-containing protein 2-like Neighboring gene NACHT and WD repeat domain-containing protein 2-like Neighboring gene potassium channel tetramerization domain containing 14 Neighboring gene integrator complex subunit 4 Neighboring gene adipogenesis associated, Mth938 domain containing

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC56088

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables class I DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell cycle IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within chordate embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within erythrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of apoptotic signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
located_in spindle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
40S ribosomal protein S3
NP_957447.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201153.1NP_957447.1  40S ribosomal protein S3

    See identical proteins and their annotated locations for NP_957447.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045902
    UniProtKB/TrEMBL
    Q7ZVD9
    Related
    ENSDARP00000132180.1, ENSDART00000162657.2
    Conserved Domains (3) summary
    cd02413
    Location:1595
    40S_S3_KH; K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH ...
    PTZ00084
    Location:4216
    PTZ00084; 40S ribosomal protein S3; Provisional
    pfam00189
    Location:105186
    Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    3038173..3049799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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