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atg6 beclin family protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 3361548, updated on 7-Oct-2018

Summary

Gene symbol
atg6
Gene description
beclin family protein
Locus tag
SPAC20G8.10c
Gene type
protein coding
RNA name
beclin family protein
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC3A12.01c

Genomic context

See atg6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1418900..1420497, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene putative protein Fft1 Neighboring gene putative ribosome biogenesis ATPase Neighboring gene tRNA Neighboring gene putative inorganic diphosphatase

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the atg6 gene: The atg6 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, M.oryzae, N.crassa, A.thaliana, rice, and frog.

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular response to nitrogen starvation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
late endosome to vacuole transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
macroautophagy IMP
Inferred from Mutant Phenotype
more info
PubMed 
phosphatidylinositol biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
protein localization by the Cvt pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm HDA PubMed 
endosome IDA
Inferred from Direct Assay
more info
PubMed 
extrinsic component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phagophore assembly site IDA
Inferred from Direct Assay
more info
PubMed 
phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 
phosphatidylinositol 3-kinase complex, class III, type I IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphatidylinositol 3-kinase complex, class III, type I ISO
Inferred from Sequence Orthology
more info
 
phosphatidylinositol 3-kinase complex, class III, type II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1418900..1420497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001356013.1NP_001342824.1  beclin family protein [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    Conserved Domains (1) summary
    pfam04111
    Location:141457
    APG6; Autophagy protein Apg6
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