Format

Send to:

Choose Destination

trim9 tripartite motif containing 9 [ Danio rerio (zebrafish) ]

Gene ID: 336099, updated on 1-Aug-2018

Summary

Official Symbol
trim9provided by ZNC
Official Full Name
tripartite motif containing 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8043
See related
Ensembl:ENSDARG00000039123 Vega:OTTDARG00000035476
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fj48c11; zgc:77357; wu:fj48c11
Orthologs

Genomic context

See trim9 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (36868365..36911704, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (36742533..36785591, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene ninein (GSK3B interacting protein) Neighboring gene phosphorylase, glycogen, liver Neighboring gene thioredoxin-related transmembrane protein 1 Neighboring gene FERM domain containing 6

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of SNARE complex assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
intracellular IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM9
NP_991126.1
XP_005157040.1
XP_005157041.1
XP_005157043.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205563.1NP_991126.1  E3 ubiquitin-protein ligase TRIM9

    See identical proteins and their annotated locations for NP_991126.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065940
    UniProtKB/TrEMBL
    Q6NZX0
    Related
    ENSDARP00000048738.5, OTTDARP00000039637, ENSDART00000048739.6, OTTDART00000050490
    Conserved Domains (5) summary
    smart00502
    Location:279405
    BBC; B-Box C-terminal domain
    smart00336
    Location:235272
    BBOX; B-Box-type zinc finger
    cd00063
    Location:443534
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:531684
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cl17238
    Location:1046
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    36868365..36911704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005156986.4XP_005157043.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    Conserved Domains (5) summary
    smart00502
    Location:279405
    BBC; B-Box C-terminal domain
    smart00336
    Location:235272
    BBOX; B-Box-type zinc finger
    cd00063
    Location:443534
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:545697
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cl17238
    Location:1046
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
  2. XM_005156983.4XP_005157040.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    Conserved Domains (5) summary
    smart00502
    Location:279405
    BBC; B-Box C-terminal domain
    smart00336
    Location:235272
    BBOX; B-Box-type zinc finger
    cd00063
    Location:443534
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:545715
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cl17238
    Location:1046
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
  3. XM_005156984.4XP_005157041.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    UniProtKB/TrEMBL
    A0A0R4IET5
    Conserved Domains (5) summary
    smart00502
    Location:279405
    BBC; B-Box C-terminal domain
    smart00336
    Location:235272
    BBOX; B-Box-type zinc finger
    cd00063
    Location:443534
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:531702
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cl17238
    Location:1046
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Support Center