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got2b glutamic-oxaloacetic transaminase 2b, mitochondrial [ Danio rerio (zebrafish) ]

Gene ID: 335974, updated on 6-May-2021

Summary

Official Symbol
got2bprovided by ZNC
Official Full Name
glutamic-oxaloacetic transaminase 2b, mitochondrialprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7917
See related
Ensembl:ENSDARG00000005840
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj40h07; zgc:56425; wu:fj40h07
Orthologs
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Genomic context

See got2b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (51774564..51793881)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (51499494..51518811)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (53229744..53249061)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene liver-expressed antimicrobial peptide 2 Neighboring gene bone morphogenetic protein 15 Neighboring gene solute carrier family 38 member 7 Neighboring gene si:ch211-122f10.4

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables L-aspartate:2-oxoglutarate aminotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in aspartate catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
glutamic-oxaloacetic transaminase 2b, mitochondrial
Names
glutamate oxaloacetate transaminase 2
glutamic-oxaloacetic transaminase 2b, mitochondrial (aspartate aminotransferase 2)
NP_956283.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199989.1NP_956283.1  glutamic-oxaloacetic transaminase 2b, mitochondrial

    See identical proteins and their annotated locations for NP_956283.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049435
    UniProtKB/TrEMBL
    Q7ZWF5
    Related
    ENSDARP00000024560.5, ENSDART00000007767.6
    Conserved Domains (2) summary
    PLN02397
    Location:26428
    PLN02397; aspartate transaminase
    pfam00155
    Location:55423
    Aminotran_1_2; Aminotransferase class I and II

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    51774564..51793881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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