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aqp1a.1 aquaporin 1a (Colton blood group), tandem duplicate 1 [ Danio rerio (zebrafish) ]

Gene ID: 335821, updated on 6-May-2021

Summary

Official Symbol
aqp1a.1provided by ZNC
Official Full Name
aquaporin 1a (Colton blood group), tandem duplicate 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7764
See related
Ensembl:ENSDARG00000023713
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
aq; fj33g04; zgc:85890; wu:fj33g04
Orthologs
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Genomic context

See aqp1a.1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (2737567..2749219)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (2895668..2907320)
103 previous assembly Zv9 (GCF_000002035.4) 2 NC_007113.5 (2888643..2900295)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ubiquitin ligase activator of nfkb 1-A Neighboring gene SERPINE1 mRNA binding protein 1b Neighboring gene aquaporin 1a (Colton blood group), tandem duplicate 2 Neighboring gene THO complex 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ammonium transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ammonium transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables carbon dioxide transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables carbon dioxide transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables channel activity IEA
Inferred from Electronic Annotation
more info
 
enables glycerol transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables water channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables water channel activity IDA
Inferred from Direct Assay
more info
PubMed 
enables water transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within ammonium transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in carbon dioxide transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within carbon dioxide transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in hyperosmotic response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within proton export across plasma membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in renal water transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in water transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
aquaporin-1a.1
Names
Aqp1aa
aqp1a
aquaporin 1
aquaporin 1a, tandem duplicate 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207059.1NP_996942.1  aquaporin-1a.1

    See identical proteins and their annotated locations for NP_996942.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066289
    UniProtKB/TrEMBL
    Q6NZ72
    Related
    ENSDARP00000036702.6, ENSDART00000032459.9
    Conserved Domains (1) summary
    pfam00230
    Location:3218
    MIP; Major intrinsic protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    2737567..2749219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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