Format

Send to:

Choose Destination

gtf2e2 general transcription factor IIE, polypeptide 2, beta [ Danio rerio (zebrafish) ]

Gene ID: 334854, updated on 2-Oct-2018

Summary

Official Symbol
gtf2e2provided by ZNC
Official Full Name
general transcription factor IIE, polypeptide 2, betaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6794
See related
Ensembl:ENSDARG00000012672 Vega:OTTDARG00000019427
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:77074; wu:fa05d01
Orthologs

Genomic context

See gtf2e2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (22851746..22872274)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (22161007..22181535)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene si:dkey-92j12.6 Neighboring gene LIM domain binding 2b Neighboring gene quinoid dihydropteridine reductase b1 Neighboring gene adhesion G protein-coupled receptor L3.1 Neighboring gene si:dkey-92j12.5

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to TFIIH-class transcription factor complex binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription initiation from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription initiation from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription factor TFIIE complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transcription initiation factor IIE subunit beta

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212731.1NP_997896.1  transcription initiation factor IIE subunit beta

    See identical proteins and their annotated locations for NP_997896.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067173
    UniProtKB/TrEMBL
    Q6NXA3
    Related
    ENSDARP00000020885.7, OTTDARP00000019769, ENSDART00000016488.9, OTTDART00000023855
    Conserved Domains (1) summary
    cd07977
    Location:67145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    22851746..22872274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394480.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    189347..209066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395214.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    182386..202106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center