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fbxw11a F-box and WD repeat domain containing 11a [ Danio rerio (zebrafish) ]

Gene ID: 334373, updated on 3-Oct-2019

Summary

Official Symbol
fbxw11aprovided by ZNC
Official Full Name
F-box and WD repeat domain containing 11aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6305
See related
Ensembl:ENSDARG00000104806
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
btrc2; fbxw11; fbxw1b; fbxw11b; wu:fd14d12; wu:fi43f07

Genomic context

See fbxw11a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (2549798..2588178, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003335280.1 (28054..67931)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (2127667..2166892)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene vault RNA 4 Neighboring gene fibroblast growth factor 18a Neighboring gene eukaryotic translation termination factor 1a Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
sprouting angiogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
F-box and WD repeat domain containing 11a
Names
F-box and WD-40 domain protein 11
F-box and WD-40 domain protein 11a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201310.1NP_958467.1  F-box and WD repeat domain containing 11a

    See identical proteins and their annotated locations for NP_958467.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045356
    UniProtKB/TrEMBL
    Q7ZVZ1
    Related
    ENSDARP00000139358.1, ENSDART00000167293.3
    Conserved Domains (5) summary
    COG2319
    Location:212506
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:225503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:63101
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:105152
    F-box-like; F-box-like
    sd00039
    Location:228263
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    2549798..2588178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173069.4XP_005173126.1  F-box and WD repeat domain containing 11a isoform X1

    Related
    ENSDARP00000151798.1, ENSDART00000188082.1
    Conserved Domains (5) summary
    COG2319
    Location:247541
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:260538
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:98136
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:140187
    F-box-like; F-box-like
    sd00039
    Location:263298
    7WD40; WD40 repeat [structural motif]
  2. XM_021480983.1XP_021336658.1  F-box and WD repeat domain containing 11a isoform X2

    Conserved Domains (4) summary
    cd00200
    Location:260483
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:263298
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:98136
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:140187
    F-box-like
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