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tm9sf2 transmembrane 9 superfamily member 2 [ Danio rerio (zebrafish) ]

Gene ID: 334370, updated on 6-May-2021

Summary

Official Symbol
tm9sf2provided by ZNC
Official Full Name
transmembrane 9 superfamily member 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6302
See related
Ensembl:ENSDARG00000003866
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fi20b0; wu:fi43d1; wu:fi20b05; wu:fi43d12
Orthologs
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Genomic context

See tm9sf2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (29798143..29824372)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (28994212..29020441)
103 previous assembly Zv9 (GCF_000002035.4) 1 NC_007112.5 (28743383..28769612)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene carboxypeptidase B2 (plasma) Neighboring gene zinc finger CCCH-type containing 13 Neighboring gene zic family member 2 (odd-paired homolog, Drosophila) b Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane 9 superfamily member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212728.1NP_997893.1  transmembrane 9 superfamily member 2 precursor

    See identical proteins and their annotated locations for NP_997893.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049137
    UniProtKB/TrEMBL
    Q7ZUF5
    Related
    ENSDARP00000016201.5, ENSDART00000019743.6
    Conserved Domains (1) summary
    pfam02990
    Location:70615
    EMP70; Endomembrane protein 70

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    29798143..29824372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394490.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    29111..55340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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