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kdm4ab lysine (K)-specific demethylase 4A, genome duplicate b [ Danio rerio (zebrafish) ]

Gene ID: 334347, updated on 12-Aug-2018

Summary

Official Symbol
kdm4abprovided by ZNC
Official Full Name
lysine (K)-specific demethylase 4A, genome duplicate bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6279
See related
Ensembl:ENSDARG00000019103 Vega:OTTDARG00000024259
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
Jmjd2a; jmjd2al; wu:fi42b08; si:ch211-262l3.1

Genomic context

See kdm4ab in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (17450227..17492093, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (17779058..17820920, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene artemin-like Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3b Neighboring gene uncharacterized LOC101886917 Neighboring gene uncharacterized LOC101883512 Neighboring gene protein tyrosine phosphatase, receptor type, f, b

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone demethylase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone demethylase activity (H3-K9 specific) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
blood vessel morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
histone methyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lysine-specific demethylase 4A
Names
jumonji domain containing 2A, like
XP_001339664.2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    17450227..17492093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001339628.8XP_001339664.2  lysine-specific demethylase 4A

    UniProtKB/TrEMBL
    F1QNG0
    Related
    ENSDARP00000009763.7, OTTDARP00000025790, ENSDART00000024302.8
    Conserved Domains (5) summary
    smart00545
    Location:1052
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00333
    Location:879932
    TUDOR; Tudor domain
    pfam02373
    Location:172288
    JmjC; JmjC domain, hydroxylase
    cd15713
    Location:755864
    ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
    cl22851
    Location:654746
    PHD_SF; PHD finger superfamily
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