Format

Send to:

Choose Destination

olfm2a olfactomedin 2a [ Danio rerio (zebrafish) ]

Gene ID: 334035, updated on 6-May-2021

Summary

Official Symbol
olfm2aprovided by ZNC
Official Full Name
olfactomedin 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2882
See related
Ensembl:ENSDARG00000077847
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
olf; olfm2; wu:fi30a; wu:fi27g0; zgc:55410; wu:fi27g06; wu:fi30a05
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See olfm2a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (54012739..54237574)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (53758076..53982911)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (54864160..55088977)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 8a Neighboring gene collagen, type V, alpha 3a Neighboring gene si:ch73-208g10.1 Neighboring gene thyroid hormone receptor interactor 10a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within neural crest cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
noelin-2; noelin-2a
Names
olfactomedin 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212717.1NP_997882.1  noelin-2a

    See identical proteins and their annotated locations for NP_997882.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044164
    UniProtKB/TrEMBL
    Q803W5
    Related
    ENSDARP00000129003.2, ENSDART00000154542.3
    Conserved Domains (2) summary
    pfam02191
    Location:189433
    OLF; Olfactomedin-like domain
    pfam12308
    Location:13111
    Noelin-1; Neurogenesis glycoprotein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    54012739..54237574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299770.3XP_009298045.1  noelin-2 isoform X2

    UniProtKB/TrEMBL
    A0A286Y8W4
    Related
    ENSDARP00000143588.1, ENSDART00000178486.2
    Conserved Domains (2) summary
    pfam02191
    Location:199443
    OLF; Olfactomedin-like domain
    pfam12308
    Location:23121
    Noelin-1; Neurogenesis glycoprotein
  2. XM_005163746.4XP_005163803.1  noelin-2 isoform X1

    UniProtKB/TrEMBL
    F1R5K6
    Related
    ENSDARP00000104138.3, ENSDART00000109894.4
    Conserved Domains (2) summary
    pfam02191
    Location:228472
    OLF; Olfactomedin-like domain
    pfam12308
    Location:52150
    Noelin-1; Neurogenesis glycoprotein
Support Center