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shcbp1 SHC SH2-domain binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 333933, updated on 2-Sep-2020

Summary

Official Symbol
shcbp1provided by ZNC
Official Full Name
SHC SH2-domain binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5865
See related
Ensembl:ENSDARG00000102068
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb251; sb:cb25; sb:cb251; wu:fi22a; im:714567; zgc:66476; im:7145675; wu:fi22a03
Orthologs

Genomic context

See shcbp1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (45828636..45852218, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (45556360..45579942, complement)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (42231102..42254717, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene zgc:194678 Neighboring gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 Neighboring gene uncharacterized LOC108190702 Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
fibroblast growth factor receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
SHC SH2 domain-binding protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199843.1NP_956137.1  SHC SH2 domain-binding protein 1

    See identical proteins and their annotated locations for NP_956137.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057538
    UniProtKB/TrEMBL
    Q6PFI4
    Related
    ENSDARP00000136762.1, ENSDART00000170224.3
    Conserved Domains (1) summary
    pfam13229
    Location:500610
    Beta_helix; Right handed beta helix region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    45828636..45852218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394708.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    282612..306120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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