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Mamld1 mastermind-like domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 333639, updated on 2-Oct-2018

Summary

Official Symbol
Mamld1provided by MGI
Official Full Name
mastermind-like domain containing 1provided by MGI
Primary source
MGI:MGI:3045303
See related
Ensembl:ENSMUSG00000059401 Vega:OTTMUSG00000017831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G630014P10Rik
Expression
Broad expression in cerebellum adult (RPKM 5.8), ovary adult (RPKM 5.2) and 21 other tissues See more
Orthologs

Genomic context

See Mamld1 in Genome Data Viewer
Location:
X; X A7.3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (71050040..71156056)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (68303431..68407892)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene x_466.1 Neighboring gene predicted gene, 38595 Neighboring gene predicted gene 14730 Neighboring gene X-linked myotubular myopathy gene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
mastermind-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081354.2NP_001074823.2  mastermind-like domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001074823.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL731843, BY733469
    Consensus CDS
    CCDS57759.1
    UniProtKB/Swiss-Prot
    P0C6A2
    Related
    ENSMUSP00000080737.3, OTTMUSP00000026854, ENSMUST00000082088.9, OTTMUST00000043173
  2. NM_001256048.1NP_001242977.1  mastermind-like domain-containing protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon, compared to variant 1. The resulting protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    AL731843, BY733469
    Consensus CDS
    CCDS57760.1
    UniProtKB/TrEMBL
    D3Z768
    Related
    ENSMUSP00000110276.3, ENSMUST00000114629.3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    71050040..71156056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318531.1XP_017174020.1  mastermind-like domain-containing protein 1 isoform X2

  2. XM_011247622.2XP_011245924.1  mastermind-like domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011245924.1

    UniProtKB/Swiss-Prot
    P0C6A2

RNA

  1. XR_001782752.1 RNA Sequence

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