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Fndc11 fibronectin type III domain containing 11 [ Mus musculus (house mouse) ]

Gene ID: 332713, updated on 5-Mar-2024

Summary

Official Symbol
Fndc11provided by MGI
Official Full Name
fibronectin type III domain containing 11provided by MGI
Primary source
MGI:MGI:3051572
See related
Ensembl:ENSMUSG00000047841 AllianceGenome:MGI:3051572
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700026M20Rik
Summary
Orthologous to human FNDC11 (fibronectin type III domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 102.6) See more
Orthologs
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Genomic context

Location:
2 H4; 2 103.63 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (180854385..180864649)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (181212592..181222856)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene PTK6 protein tyrosine kinase 6 Neighboring gene predicted gene, 40033 Neighboring gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites Neighboring gene STARR-positive B cell enhancer ABC_E4531 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene helicase with zinc finger 2, transcriptional coactivator Neighboring gene glucocorticoid modulatory element binding protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
fibronectin type III domain-containing protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001379471.1NP_001366400.1  fibronectin type III domain-containing protein 11 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) repesents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AL450341, AL845506
    UniProtKB/TrEMBL
    A2AS00
    Conserved Domains (1) summary
    pfam17744
    Location:1317
    DUF5581; Family of unknown function (DUF5581)
  2. NM_001379472.1NP_001366401.1  fibronectin type III domain-containing protein 11 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AL845506
    UniProtKB/TrEMBL
    A2AS00
    Related
    ENSMUSP00000104463.2, ENSMUST00000108835.2
    Conserved Domains (1) summary
    pfam17744
    Location:1317
    DUF5581; Family of unknown function (DUF5581)
  3. NM_199312.5NP_955016.1  fibronectin type III domain-containing protein 11 isoform b

    See identical proteins and their annotated locations for NP_955016.1

    Status: VALIDATED

    Source sequence(s)
    AL845506
    Consensus CDS
    CCDS17205.1
    UniProtKB/Swiss-Prot
    A2AS01, Q80WB0
    Related
    ENSMUSP00000056320.7, ENSMUST00000050026.7
    Conserved Domains (1) summary
    pfam17744
    Location:1317
    DUF5581; Family of unknown function (DUF5581)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    180854385..180864649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239949.3XP_011238251.1  fibronectin type III domain-containing protein 11 isoform X2

    See identical proteins and their annotated locations for XP_011238251.1

    UniProtKB/Swiss-Prot
    A2AS01, Q80WB0
    Conserved Domains (1) summary
    pfam17744
    Location:1317
    DUF5581; Family of unknown function (DUF5581)
  2. XM_036162336.1XP_036018229.1  fibronectin type III domain-containing protein 11 isoform X1

    UniProtKB/TrEMBL
    A2AS00
    Conserved Domains (1) summary
    pfam17744
    Location:1317
    DUF5581; Family of unknown function (DUF5581)