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Pate2 prostate and testis expressed 2 [ Mus musculus (house mouse) ]

Gene ID: 330921, updated on 12-May-2024

Summary

Official Symbol
Pate2provided by MGI
Official Full Name
prostate and testis expressed 2provided by MGI
Primary source
MGI:MGI:2685692
See related
Ensembl:ENSMUSG00000074452 AllianceGenome:MGI:2685692
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm846; Pate-M; mANLP1
Summary
Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in alimentary system; male reproductive gland or organ; spleen; and uterus. Orthologous to human PATE2 (prostate and testis expressed 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in genital fat pad adult (RPKM 12.2) and testis adult (RPKM 0.3) See more
Orthologs
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Genomic context

See Pate2 in Genome Data Viewer
Location:
9 A4; 9 20.32 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (35580935..35584185)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (35611800..35672889)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene prostate and testis expressed 4 Neighboring gene STARR-seq mESC enhancer starr_23771 Neighboring gene prostate and testis expressed 3 Neighboring gene prostate and testis expressed 1 Neighboring gene prostate and testis expressed 10

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4)  1 citation
  • Targeted (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
prostate and testis expressed protein 2
Names
PATE-like protein M

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033421.3NP_001028593.1  prostate and testis expressed protein 2 precursor

    See identical proteins and their annotated locations for NP_001028593.1

    Status: VALIDATED

    Source sequence(s)
    AC113081
    Consensus CDS
    CCDS52756.1
    UniProtKB/Swiss-Prot
    Q3UMN1, Q3UW31
    UniProtKB/TrEMBL
    A0A1L1SRF3
    Related
    ENSMUSP00000113239.2, ENSMUST00000118254.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    35580935..35584185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)