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Fhad1 forkhead-associated phosphopeptide binding domain 1 [ Mus musculus (house mouse) ]

Gene ID: 329977, updated on 7-Apr-2024

Summary

Official Symbol
Fhad1provided by MGI
Official Full Name
forkhead-associated phosphopeptide binding domain 1provided by MGI
Primary source
MGI:MGI:1920323
See related
Ensembl:ENSMUSG00000051435 AllianceGenome:MGI:1920323
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B230311F11; 2900090M10Rik
Summary
Is expressed in central nervous system and olfactory epithelium. Orthologous to human FHAD1 (forkhead associated phosphopeptide binding domain 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 39.2) and lung adult (RPKM 2.2) See more
Orthologs
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Genomic context

See Fhad1 in Genome Data Viewer
Location:
4 D3; 4 74.75 cM
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (141617741..141742438, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (141890430..142015127, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene EF hand domain containing 2 Neighboring gene forkhead-associated phosphopeptide binding domain 1, opposite strand 2 Neighboring gene predicted gene, 46874 Neighboring gene predicted gene, 42338 Neighboring gene predicted gene, 35295 Neighboring gene STARR-positive B cell enhancer mm9_chr4:141508770-141509070 Neighboring gene forkhead-associated phosphopeptide binding domain 1, opposite strand 1 Neighboring gene RIKEN cDNA 4930455G09 gene Neighboring gene STARR-positive B cell enhancer ABC_E10274 Neighboring gene transmembrane protein 51 Neighboring gene STARR-seq mESC enhancer starr_11942 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:141636026-141636227 Neighboring gene Tmem51 opposite strand 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
forkhead-associated domain-containing protein 1
Names
FHA domain-containing protein 1
forkhead-associated (FHA) phosphopeptide binding domain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177868.4NP_808536.2  forkhead-associated domain-containing protein 1

    See identical proteins and their annotated locations for NP_808536.2

    Status: VALIDATED

    Source sequence(s)
    AL645731, AL663037
    Consensus CDS
    CCDS51349.1
    UniProtKB/Swiss-Prot
    A2AAC3, A6PWD2, Q3UFH8, Q8BLA4, Q8CHV8, Q9CUV2
    Related
    ENSMUSP00000101405.3, ENSMUST00000105779.9
    Conserved Domains (3) summary
    COG1196
    Location:286937
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR03354
    Location:19159
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:1884
    FHA; FHA domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    141617741..141742438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320274.2XP_017175763.1  forkhead-associated domain-containing protein 1 isoform X11

    Conserved Domains (2) summary
    COG1196
    Location:286925
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  2. XM_030253621.1XP_030109481.1  forkhead-associated domain-containing protein 1 isoform X6

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  3. XM_030253618.1XP_030109478.1  forkhead-associated domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  4. XM_030253617.1XP_030109477.1  forkhead-associated domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  5. XM_030253620.1XP_030109480.1  forkhead-associated domain-containing protein 1 isoform X4

    Conserved Domains (3) summary
    COG1196
    Location:286977
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR03354
    Location:19159
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:1884
    FHA; FHA domain
  6. XM_017320272.1XP_017175761.1  forkhead-associated domain-containing protein 1 isoform X8

    Conserved Domains (2) summary
    COG1196
    Location:262899
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  7. XM_017320269.1XP_017175758.1  forkhead-associated domain-containing protein 1 isoform X5

    Conserved Domains (2) summary
    COG1196
    Location:324975
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  8. XM_030253625.1XP_030109485.1  forkhead-associated domain-containing protein 1 isoform X13

    Conserved Domains (3) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02463
    Location:7131368
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam00498
    Location:18122
    FHA; FHA domain
  9. XM_030253624.2XP_030109484.1  forkhead-associated domain-containing protein 1 isoform X12

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  10. XM_030253623.2XP_030109483.1  forkhead-associated domain-containing protein 1 isoform X10

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  11. XM_017320279.1XP_017175768.1  forkhead-associated domain-containing protein 1 isoform X14

    Conserved Domains (3) summary
    PTZ00121
    Location:6401258
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:262899
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  12. XM_006538956.5XP_006539019.1  forkhead-associated domain-containing protein 1 isoform X9

    See identical proteins and their annotated locations for XP_006539019.1

    UniProtKB/Swiss-Prot
    A2AAC3, A6PWD2, Q3UFH8, Q8BLA4, Q8CHV8, Q9CUV2
    Related
    ENSMUSP00000101406.2, ENSMUST00000105780.8
    Conserved Domains (3) summary
    COG1196
    Location:286937
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR03354
    Location:19159
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:1884
    FHA; FHA domain
  13. XM_030253619.2XP_030109479.1  forkhead-associated domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  14. XM_030253622.2XP_030109482.1  forkhead-associated domain-containing protein 1 isoform X7

    Conserved Domains (2) summary
    COG1196
    Location:3241015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  15. XM_036164201.1XP_036020094.1  forkhead-associated domain-containing protein 1 isoform X15

    Conserved Domains (2) summary
    COG1196
    Location:262889
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18122
    FHA; FHA domain
  16. XM_017320280.3XP_017175769.1  forkhead-associated domain-containing protein 1 isoform X16

    Conserved Domains (3) summary
    TIGR02168
    Location:326737
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR03354
    Location:55197
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:18122
    FHA; FHA domain

RNA

  1. XR_003954977.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_028429.1: Suppressed sequence

    Description
    NM_028429.1: This RefSeq was temporarily suppressed because the CDS was partial.