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Gm9342 predicted gene 9342 [ Mus musculus (house mouse) ]

Gene ID: 329482, updated on 26-Sep-2022

Summary

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Official Symbol
Gm9342provided by MGI
Official Full Name
predicted gene 9342provided by MGI
Gene description
doublecortin domain containing 5
Primary source
MGI:MGI:3779848
See related
AllianceGenome:MGI:3779848
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dcdc5; 668765; EG436559; 4732421G10Rik
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Gm9342 in Genome Data Viewer
Location:
2; 2 E3
Exon count:
30
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (105911209..106247569)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (106080864..106409743)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C24 Neighboring gene 60S ribosomal protein L39 pseudogene Neighboring gene predicted gene, 46755 Neighboring gene predicted gene 14015 Neighboring gene predicted gene, 36544

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Common and divergent roles for members of the mouse DCX superfamily. Coquelle FM, et al. Cell Cycle, 2006 May. PMID 16628014
  2. The evolving doublecortin (DCX) superfamily. Reiner O, et al. BMC Genomics, 2006 Jul 26. PMID 16869982, Free PMC Article
  3. Analysis of Pax6 contiguous gene deletions in the mouse, Mus musculus, identifies regions distinct from Pax6 responsible for extreme small-eye and belly-spotting phenotypes. Favor J, et al. Genetics, 2009 Aug. PMID 19474196, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Other Names

  • doublecortin domain containing 5
  • doublecortin domain-containing protein 1 pseudogene

General protein information

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Preferred Names
doublecortin domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_175338.1 RNA Sequence

    Status: INFERRED

    Source sequence(s)
    AL670860, BX649317, BX649381

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    105911209..106247569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

  2. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    105868563..105883873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162324.1 → XP_036018217.1  doublecortin domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:769 → 841
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_036162326.1 → XP_036018219.1  doublecortin domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:769 → 841
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_036162327.1 → XP_036018220.1  doublecortin domain-containing protein 5 isoform X2

    Conserved Domains (3) summary
    cd17158
    Location:458 → 591
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:708 → 780
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  4. XM_036162325.1 → XP_036018218.1  doublecortin domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:769 → 841
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  5. XM_011239885.2 → XP_011238187.1  doublecortin domain-containing protein 5 isoform X3

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    cl26069
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:15 → 122
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  6. XM_011239886.3 → XP_011238188.1  doublecortin domain-containing protein 5 isoform X4

    Conserved Domains (2) summary
    cl26069
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:15 → 122
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  7. XM_017319384.3 → XP_017174873.1  doublecortin domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:769 → 841
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  8. XM_006500501.4 → XP_006500564.1  doublecortin domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:769 → 841
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  9. XM_036162328.1 → XP_036018221.1  doublecortin domain-containing protein 5 isoform X5

    Conserved Domains (2) summary
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:15 → 122
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  10. XM_006500503.4 → XP_006500566.1  doublecortin domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd17158
    Location:519 → 652
    DCX3_DCDC5; Doublecortin-like domain 3 found in doublecortin domain-containing protein 5 (DCDC5)
    pfam00652
    Location:272 → 372
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl28922
    Location:769 → 841
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177844.2: Suppressed sequence

    Description
    NM_177844.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

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