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Emx2os Emx2 opposite strand/antisense transcript, non-protein coding [ Mus musculus (house mouse) ]

Gene ID: 329078, updated on 17-Aug-2024

Summary

Official Symbol
Emx2osprovided by MGI
Official Full Name
Emx2 opposite strand/antisense transcript, non-protein codingprovided by MGI
Primary source
MGI:MGI:3052329
See related
Ensembl:ENSMUSG00000087095 AllianceGenome:MGI:3052329
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human EMX2OS (EMX2 opposite strand/antisense RNA). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in limb E14.5 (RPKM 2.1), ovary adult (RPKM 1.9) and 10 other tissues See more
Orthologs
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Genomic context

Location:
19 D3; 19 55.9 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (59413536..59447067, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (59425104..59458635, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 8 Neighboring gene predicted gene, 50440 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:59463713-59463963 Neighboring gene predicted gene, 33756 Neighboring gene VISTA enhancer mm448 Neighboring gene STARR-seq mESC enhancer starr_46590 Neighboring gene empty spiracles homeobox 2 Neighboring gene RIKEN cDNA 2700089I24 gene Neighboring gene ribosomal protein L17 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Other Names

  • EMX2 opposite strand/antisense RNA (non-protein coding)
  • empty spiracles homolog 2 opposite strand

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002863.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098733, AK033011
    Related
    ENSMUST00000136990.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    59413536..59447067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)