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nanH2 putative neuraminidase precursor [ Bacteroides fragilis NCTC 9343 ]

Gene ID: 3289149, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
nanH2
Gene description
putative neuraminidase precursor
Locus tag
BF9343_3944
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacteroides fragilis NCTC 9343 (culture-collection: NCTC:9343)
Lineage
Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Miscellaneous features

  • Loc: 4762106-4762168 Signal peptide predicted for BF4051 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 between residues 21 and 22
  • Loc: 4762820-4762855 Pfam match to entry PF02012 BNR, BNR/Asp-box repeat, score 15.4, E-value 0.12
  • Loc: 4763057-4763092 Pfam match to entry PF02012 BNR, BNR/Asp-box repeat, score 15.4, E-value 0.11
  • Loc: 4763237-4763272 Pfam match to entry PF02012 BNR, BNR/Asp-box repeat, score 14.9, E-value 0.17
  • Loc: 4763378-4763413 Pfam match to entry PF02012 BNR, BNR/Asp-box repeat, score 10.8, E-value 1.8
  • Loc: 4763558-4763593 Pfam match to entry PF02012 BNR, BNR/Asp-box repeat, score 7.4, E-value 5.4
Names
putative neuraminidase precursor
YP_213623.1
  • Highly similar to Bacteroides fragilis neuraminidase precursor NanH SWALL:Q45145 (EMBL:D28493) (544 aa) fasta scores: E(): 2.5e-173, 78.08% id in 543 aa, and to Clostridium sordellii sialidase precursor SWALL:NANH_CLOSO (SWALL:P15698) (404 aa) fasta scores: E(): 1.2e-22, 28.92% id in 401 aa. Note: Also similar to BF1806 NanH (545 aa) fasta scores: E(): 3.6e-174, 78.269% identity in 543 aa overlap

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003228.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_213623.1 putative neuraminidase precursor [Bacteroides fragilis NCTC 9343]

    Status: PROVISIONAL

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