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Slfn5 schlafen 5 [ Mus musculus (house mouse) ]

Gene ID: 327978, updated on 31-Jan-2019

Summary

Official Symbol
Slfn5provided by MGI
Official Full Name
schlafen 5provided by MGI
Primary source
MGI:MGI:1329004
See related
Ensembl:ENSMUSG00000054404
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI956840
Expression
Broad expression in subcutaneous fat pad adult (RPKM 9.0), heart adult (RPKM 7.4) and 19 other tissues See more

Genomic context

See Slfn5 in Genome Data Viewer
Location:
11; 11 C
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (82951349..82964855)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (82765604..82778352)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene notchless homolog 1 Neighboring gene unc-45 myosin chaperone B Neighboring gene unc-45 myosin chaperone B, opposite strand Neighboring gene schlafen 5, opposite strand Neighboring gene SET domain-containing protein 8 pseudogene Neighboring gene schlafen 9 Neighboring gene microRNA 7679

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
schlafen family member 5
Names
OTTMUSCASG00059405
OTTMUSPWKG00059391
OTTMUSWSBG00059297
expressesd sequence AI956840

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183201.4NP_899024.3  schlafen family member 5

    See identical proteins and their annotated locations for NP_899024.3

    Status: VALIDATED

    Source sequence(s)
    AK036486, AK040359, AL603745
    Consensus CDS
    CCDS25153.1
    UniProtKB/Swiss-Prot
    Q8CBA2
    Related
    ENSMUSP00000064819.2, ENSMUST00000067443.9
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    82951349..82964855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533574.2XP_006533637.1  schlafen family member 5 isoform X1

    See identical proteins and their annotated locations for XP_006533637.1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
  2. XM_006533580.1XP_006533643.1  schlafen family member 5 isoform X1

    See identical proteins and their annotated locations for XP_006533643.1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
  3. XM_017314617.1XP_017170106.1  schlafen family member 5 isoform X1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
  4. XM_006533579.1XP_006533642.1  schlafen family member 5 isoform X1

    See identical proteins and their annotated locations for XP_006533642.1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Related
    ENSMUSP00000103792.1, ENSMUST00000108157.1
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
  5. XM_017314616.1XP_017170105.1  schlafen family member 5 isoform X1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
  6. XM_017314615.1XP_017170104.1  schlafen family member 5 isoform X1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
  7. XM_017314618.1XP_017170107.1  schlafen family member 5 isoform X1

    UniProtKB/Swiss-Prot
    Q8CBA2
    Conserved Domains (5) summary
    PHA02782
    Location:43328
    PHA02782; hypothetical protein; Provisional
    pfam04326
    Location:188296
    AlbA_2; Putative DNA-binding domain
    pfam09848
    Location:571759
    DUF2075; Uncharacterized conserved protein (DUF2075)
    cl21455
    Location:570651
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl22977
    Location:832880
    UvrD_C_2; UvrD-like helicase C-terminal domain
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