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parvb parvin, beta [ Danio rerio (zebrafish) ]

Gene ID: 325686, updated on 12-Aug-2018

Summary

Official Symbol
parvbprovided by ZNC
Official Full Name
parvin, betaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4411
See related
Ensembl:ENSDARG00000019117 Vega:OTTDARG00000039240
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fd02e01; zgc:73117; wu:fd02e01

Genomic context

See parvb in Genome Data Viewer
Location:
chromosome: 25
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (5033763..5064348)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (4907274..4937905)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain-containing protein 5A-like Neighboring gene histone deacetylase 10 Neighboring gene parvin, gamma Neighboring gene shisa like 1b

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
actin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
actin binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
actin cytoskeleton reorganization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
actin cytoskeleton reorganization IEA
Inferred from Electronic Annotation
more info
 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell projection assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-matrix adhesion IMP
Inferred from Mutant Phenotype
more info
PubMed 
establishment or maintenance of cell polarity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of heart contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
substrate adhesion-dependent cell spreading IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Z disc IDA
Inferred from Direct Assay
more info
PubMed 
actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199726.1NP_956020.1  beta-parvin

    See identical proteins and their annotated locations for NP_956020.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059481
    UniProtKB/TrEMBL
    Q6PC42
    Related
    ENSDARP00000012119.6, OTTDARP00000044165, ENSDART00000011751.9, OTTDART00000056325
    Conserved Domains (1) summary
    pfam00307
    Location:89189
    CH; Calponin homology (CH) domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    5033763..5064348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009297732.3XP_009296007.1  beta-parvin isoform X1

    See identical proteins and their annotated locations for XP_009296007.1

    UniProtKB/TrEMBL
    Q6PC42
    Conserved Domains (1) summary
    pfam00307
    Location:89189
    CH; Calponin homology (CH) domain
  2. XM_021470454.1XP_021326129.1  beta-parvin isoform X3

    Conserved Domains (1) summary
    pfam00307
    Location:53161
    CH; Calponin homology (CH) domain
  3. XM_005174250.4XP_005174307.1  beta-parvin isoform X2

    Conserved Domains (1) summary
    pfam00307
    Location:65165
    CH; Calponin homology (CH) domain
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