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atf1 activating transcription factor 1 [ Danio rerio (zebrafish) ]

Gene ID: 325609, updated on 22-Nov-2020

Summary

Official Symbol
atf1provided by ZNC
Official Full Name
activating transcription factor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4334
See related
Ensembl:ENSDARG00000044301
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:64099; wu:fc92c07
Orthologs

Genomic context

See atf1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (39509434..39521736, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (39511898..39524200, complement)
103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (39440298..39452600, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene si:ch211-173n18.3 Neighboring gene si:ch211-173n18.4 Neighboring gene si:dkeyp-80d11.1 Neighboring gene disco-interacting protein 2 homolog Bb Neighboring gene activating transcription factor 7b

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
ATF4-CREB1 transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199723.1NP_956017.1  cyclic AMP-dependent transcription factor ATF-1

    See identical proteins and their annotated locations for NP_956017.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053252
    UniProtKB/TrEMBL
    Q7T351
    Related
    ENSDARP00000065037.4, ENSDART00000065038.5
    Conserved Domains (2) summary
    cd14690
    Location:248302
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:87118
    pKID; pKID domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    39509434..39521736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394662.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    78083..91525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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